miRBase entry: ptr-mir-548i-3

Stem-loop ptr-mir-548i-3


Accession
MI0008755
Description
Pan troglodytes ptr-mir-548i-3 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548i-3
(2 sentences)

Sequence

agauggcuccgaaguuugcauccucuuagguuggugcAAAAGUAAUUGCGGAUUUUGCCauuaaaaguaauggcaaaaacagcaauuauuuuuguacuagccuaguaucuuuucuccuucuaccaaacuuugucccugagacaucuca
(((((.((((((((((((.......((((((((((((((((((((((((.(.(((((((((((....))))))))))).).))))))))))))))))))))))))..................))))))))).....))).)))))..

Structure
--     g   -----         -----------cauccuc                        G A           a 
  agaug cuc     cgaaguuug                  uuagguuggugcAAAAGUAAUUGC G UUUUGCCauua a
  ||||| |||     |||||||||                  |||||||||||||||||||||||| | |||||||||||  
  ucuac gag     guuucaaac                  gauccgaucauguuuuuauuaacg c aaaacgguaau a
ac     a   ucccu         caucuuccucuuuucuau                        a a           g 


Annotation confidence Not enough data
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Genome context
chr7: 100811218-100811365 [+]

Database links

Mature ptr-miR-548i

Accession MIMAT0008223
Description Pan troglodytes ptr-miR-548i mature miRNA
Sequence 38 - AAAAGUAAUUGCGGAUUUUGCC - 59
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70