miRBase entry: ptr-mir-548a-1

Stem-loop ptr-mir-548a-1


Accession
MI0008746
Description
Pan troglodytes ptr-mir-548a-1 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548a-1
(2 sentences)

Sequence

gcagggagguauuaaguuggugcaaaaguaauugugguuuuugccauuaaaaguaacgaCAAAACUGGCAAUUACUUUUGCaccaaaccugauauu
.......(((((((.((((((((((((((((((((.(.(((((.(.(((....))).).))))).).))))))))))))))))).))).)))))))

Structure
gcaggga       a   -                 g u     c a   a 
       gguauua guu ggugcaaaaguaauugu g uuuug c uua a
       ||||||| ||| ||||||||||||||||| | ||||| | |||  
       uuauagu caa ccaCGUUUUCAUUAACG U AAAAC g aau a
-------       c   a                 G C     a c   g 


Annotation confidence Not enough data
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Genome context
chr6: 18773503-18773598 [+]

Database links

Mature ptr-miR-548a

Accession MIMAT0008218
Description Pan troglodytes ptr-miR-548a mature miRNA
Sequence 60 - CAAAACUGGCAAUUACUUUUGC - 81
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70