miRBase entry: ptr-mir-527

Stem-loop ptr-mir-527


Accession
MI0008740
Description
Pan troglodytes ptr-mir-527 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaggcugugacuCUGCAAAGGGAAGCCCUUUCuguugucuaaaagaaaagaaagugcuucccuuuggugaauuacgguuugaga
((((((((((((.((..(((((((((((.((((((....(((...)))..)))))).)))))))))))..)).)))))))))))).

Structure
-            c  UG           C      guug   a 
 cucaggcuguga uC  CAAAGGGAAGC CUUUCu    ucu  
 |||||||||||| ||  ||||||||||| ||||||    ||| a
 gaguuuggcauu ag  guuucccuucg gaaaga    aga  
a            a  ug           u      --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56101441-56101526 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ptr-mir-527
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-527

Accession MIMAT0008212
Description Pan troglodytes ptr-miR-527 mature miRNA
Sequence 15 - CUGCAAAGGGAAGCCCUUUC - 34
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70