miRBase entry: ptr-mir-523

Stem-loop ptr-mir-523


Accession
MI0008734
Description
Pan troglodytes ptr-mir-523 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ugugacccucuagagggaagcgcuuucuguugucugaaagaaaaGAACGCGCUUCCCUAUAGAGGGUuacccuuugaga
.(((((((((((.((((((((((.((((....(((...)))..)))).)))))))))).))))))))))).........

Structure
--------u           g          u    guug   g 
         gugacccucua agggaagcgc uucu    ucu  
         ||||||||||| |||||||||| ||||    ||| a
         cauUGGGAGAU UCCCUUCGCG AAGa    aga  
agaguuucc           A          C    --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56046532-56046610 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ptr-mir-523
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-523

Accession MIMAT0008207
Description Pan troglodytes ptr-miR-523 mature miRNA
Sequence 45 - GAACGCGCUUCCCUAUAGAGGGU - 67
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70