miRBase entry: ptr-mir-518e

Stem-loop ptr-mir-518e


Accession
MI0008716
Description
Pan troglodytes ptr-mir-518e precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaggcugugacccucuagagggaagcgcuuucuguuggcuaaaagaaaagAAAGCGCUUCCCUUCAGAGUGuuaacgcuuugaga
(((((((..((((.((((.((((((((((((((((...............)))))))))))))))).)))).))))..)).))))).

Structure
-     -  ug    c    a                guuggc 
 cucag gc  ugac cucu gagggaagcgcuuucu      u
 ||||| ||  |||| |||| ||||||||||||||||      a
 gaguu cg  auuG GAGA UUCCCUUCGCGAAAga      a
a     u  ca    U    C                aaagaa 


Annotation confidence Not enough data
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Genome context
chr19: 56077248-56077334 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ptr-mir-518e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-518e

Accession MIMAT0008190
Description Pan troglodytes ptr-miR-518e mature miRNA
Sequence 53 - AAAGCGCUUCCCUUCAGAGUG - 73
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70