miRBase entry: ptr-mir-487a

Stem-loop ptr-mir-487a


Accession
MI0008683
Description
Pan troglodytes ptr-mir-487a precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
1 open access papers mention ptr-mir-487a
(4 sentences)

Sequence

guacuugaagagugguuaucccugcuguguucgcugaauuuaugacgAAUCAUACAGGGACAUCCAGUUuuucaguauc
(((((.(((((.(((...((((((.(((((((((.........).)))).))))))))))...))).))))).))))).

Structure
-     u     g   uua      c    -    - uga 
 guacu gaaga ugg   ucccug ugug uucg c   a
 ||||| ||||| |||   |||||| |||| |||| |   u
 uauga uuuUU ACC   AGGGAC AUAC AAgc g   u
c     c     G   UAC      -    U    a uau 


Annotation confidence Not enough data
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Genome context
chr14: 86300680-86300758 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from ptr-mir-487a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-487a

Accession MIMAT0008161
Description Pan troglodytes ptr-miR-487a mature miRNA
Sequence 48 - AAUCAUACAGGGACAUCCAGUU - 69
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70