Stem-loop ptr-mir-34c

Accession

MI0008633

Description

Pan troglodytes ptr-mir-34c precursor miRNA

Gene family

MIPF0000039; mir-34

Literature search

1 open access papers mention ptr-mir-34c
(18 sentences)

Sequence

gucuaguuacuaggcaguguaguuagcugauugcuaauaguaccAAUCACUAACCACACGGCCAGGuaaaaagauu
((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))).

Structure

-    ag     a   a    a     c      c  a 
 gucu  uuacu ggc gugu guuag ugauug ua u
 ||||  ||||| ||| |||| ||||| |||||| ||  
 uaga  aauGG CCG CACA CAAUC ACUAAc au a
u    aa     A   G    C     -      c  g 

Annotation confidence Not enough data

Genome context

chr11: 111895735-111895810 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-34c

Mature ptr-miR-34c

• Accession: MIMAT0008114
• Description: Pan troglodytes ptr-miR-34c mature miRNA
• Sequence: 45 - AAUCACUAACCACACGGCCAGG - 66
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70