miRBase entry: ptr-mir-340

Stem-loop ptr-mir-340


Accession
MI0008628
Description
Pan troglodytes ptr-mir-340 precursor miRNA
Gene family
MIPF0000191; mir-340


Sequence

uuguaccuggugugaUUAUAAAGCAAUGAGACUGAUUgucauaugucguuugugggauccgucucaguuacuuuauagccauaccugguaucuu
..(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).)))))...

Structure
-uu     u      a        -CAA      U    g     ug 
   guacc ggugug UUAUAAAG    UGAGAC GAUU ucaua  u
   ||||| |||||| ||||||||    |||||| |||| |||||  c
   uaugg ccauac gauauuuc    acucug cuag ggugu  g
uuc     u      c        auug      c    -     uu 


Annotation confidence Not enough data
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Genome context
chr5: 180589191-180589284 [-]

Database links

Mature ptr-miR-340

Accession MIMAT0008109
Description Pan troglodytes ptr-miR-340 mature miRNA
Sequence 16 - UUAUAAAGCAAUGAGACUGAUU - 37
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70