Stem-loop sequence ptr-mir-30c-1

Accession

MI0008605 (change log)

Description

Pan troglodytes miR-30c-1 stem-loop

Gene family

MIPF0000005; mir-30

Literature search

2 open access papers mention ptr-mir-30c-1
(2 sentences)

Stem-loop

   -     cu    ugu u       u   aca         ---g  a 
5'  ccaug  guag   g guaaaca ccu   cucucagcu    ug g
    |||||  ||||   | ||||||| |||   |||||||||    ||  
3'  gguac  cguc   c cauuugu ggg   gagggucgg    ac c
   a     --    uuc u       u   --a         ugga  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Pan_tro3.0; GCA_000001515.5): chr1: 40188188-40188275 [+]
• Overlapping transcripts:

  sense

  ENSPTRT00000054278 ; ptr-mir-30c-1-201; exon 1

  ENSPTRT00000001139 ; NFYC-201; intron 5

Clustered miRNAs

< 10kb from ptr-mir-30c-1

• ptr-mir-30e: chr1: 40185260-40185350 [+]
• ptr-mir-30c-1: chr1: 40188188-40188275 [+]

Database links

• EntrezGene:MIR30C-1
• miRBase Tracker:MI0008605

Mature sequence ptr-miR-30c

• Accession: MIMAT0002614
• Sequence: 16 - uguaaacauccuacacucucagc - 38
• Evidence: by similarity; MI0000736
• Predicted targets:
  • TargetScanVert:ptr-miR-30c

References

1. PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).