miRBase entry: sly-MIR397

Stem-loop sly-MIR397


Accession
MI0008371
Description
Solanum lycopersicum sly-MIR397 precursor miRNA
Gene family
MIPF0000120; MIR397

Literature search
7 open access papers mention sly-MIR397
(27 sentences)

Sequence

cagaguacuuagaaacaugAUUGAGUGCAGCGUUGAUGAcauauuugagaaguccugcauuugggccuuccucauuuuucaUCAACGCUAAACUCGAUCAUGuuuuuaauucucug
(((((...((((((((((((((((((..(((((((((((...(..(((((((.(((......))).))).))))..).)))))))))))..))))))))))))))))))..)))))

Structure
     uac                  GC           cau uu    -   u   gc 
cagag   uuagaaacaugAUUGAGU  AGCGUUGAUGA   a  ugag aag ccu  a
|||||   ||||||||||||||||||  |||||||||||   |  |||| ||| |||   
gucuc   aauuuuuGUACUAGCUCA  UCGCAACUacu   u  acuc uuc ggg  u
     -uu                  AA           --u uu    c   c   uu 


Annotation confidence Not enough data
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Genome context
chr7: 66059126-66059241 [-]

Database links

Mature sly-miR397-5p

Accession MIMAT0007928
Description Solanum lycopersicum sly-miR397-5p mature miRNA
Sequence 20 - AUUGAGUGCAGCGUUGAUGA - 39
Evidence experimental
454 [1]

Mature sly-miR397-3p

Accession MIMAT0037335
Description Solanum lycopersicum sly-miR397-3p mature miRNA
Sequence 82 - UCAACGCUAAACUCGAUCAUG - 102
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18653800
    Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
    "Genome Res (2008) 18:1602-1609

  2. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195