miRBase entry: sly-MIR395b

Stem-loop sly-MIR395b


Accession
MI0008370
Description
Solanum lycopersicum sly-MIR395b precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
10 open access papers mention sly-MIR395b
(33 sentences)

Sequence

uuaagguguucccuagaguucccuugaccacuucaugagggcuuacuuugauguuagaagcguugCUGAAGUGUUUGGGGGAACUCCuggguugacuuuaa
.((((((...(((..((((((((((((.(((((((..((.((((.((........)))))).))..))))))).))))))))))))..)))...)))))).

Structure
u      guu   ua            c       ug  g    a  uug 
 uaaggu   ccc  gaguucccuuga cacuuca  ag gcuu cu   a
 ||||||   |||  |||||||||||| |||||||  || |||| ||    
 auuuca   ggg  CUCAAGGGGGUU GUGAAGU  uu cgaa ga   u
a      guu   uC            U       Cg  g    -  uug 


Annotation confidence Not enough data
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Genome context
chr5: 1713691-1713791 [+]

Database links

Mature sly-miR395b

Accession MIMAT0007927
Description Solanum lycopersicum sly-miR395b mature miRNA
Sequence 66 - CUGAAGUGUUUGGGGGAACUCC - 87
Evidence experimental
454 [1]

References

  1. PubMed ID: 18653800
    Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
    "Genome Res (2008) 18:1602-1609

  2. PubMed ID: 18602455
    Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
    "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
    "Gene (2008) 423:1-7