miRBase entry: sly-MIR169b

Stem-loop sly-MIR169b


Accession
MI0008362
Description
Solanum lycopersicum sly-MIR169b precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
18 open access papers mention sly-MIR169b
(48 sentences)

Sequence

uuuuaauuugguuucaggcagucuccuuggcuaccuugacaugcucuuuucuuuuaugcaagauaucuuuucaaaauagaaguuuuagucaucguuaaaauaucgagacgggguuacaagucuuauuuaaaagaagagaagucuagcaugaugagaagagucuuauuuggUAGCCAAGGAUGACUUGCCUGcaccguacuugaaa
.(((((..((((..(((((((((((((((((((((.......(((((((((..((((((.((((.(((((((......((.(((((((......))))))).))(((((..(....)..)))))........))))))).)))).)))))).))))))))).......)))))))))))).))).)))))).))))...))))).

Structure
u     -uu    uu      -   -            uugacau         uu      a    a       ----------------------aaaaua  a       uc 
 uuuaa   uggu  caggca guc uccuuggcuacc       gcucuuuuc  uuaugc agau ucuuuuc                            ga guuuuag  a
 |||||   ||||  |||||| ||| ||||||||||||       |||||||||  |||||| |||| |||||||                            || |||||||   
 aaguu   gcca  GUCCGU CAG AGGAACCGAUgg       ugagaagag  aguacg ucug agagaag                            cu uaaaauu  u
a     cau    -c      U   U            uuuauuc         -u      a    a       aaaauuuauucugaacauuggggcagag  a       gc 


Annotation confidence Not enough data
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Genome context
chr7: 2174563-2174767 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sly-MIR169b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sly-miR169b

Accession MIMAT0007919
Description Solanum lycopersicum sly-miR169b mature miRNA
Sequence 171 - UAGCCAAGGAUGACUUGCCUG - 191
Evidence experimental
454 [1]

References

  1. PubMed ID: 18653800
    Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
    "Genome Res (2008) 18:1602-1609