miRBase entry: sly-MIR169a

Stem-loop sly-MIR169a


Accession
MI0008361
Description
Solanum lycopersicum sly-MIR169a precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
17 open access papers mention sly-MIR169a
(52 sentences)

Sequence

ggucuauaagguuugcaugaaguugaagagagucaaguugCAGCCAAGGAUGACUUGCCGGaccaaaaguugugaccauuuucuaguuccggcaaguuguuuuuggcuauaaguuugcucucuucuucucauguuauccucguuagacc
((((((..(((...((((((.(..(((((((((.((.(((.(((((((((((((((((((((.(.(((((.......)))))...).))))))))))))))))))))).))).)).)))))))))..)))))))...)))...))))))

Structure
      -ua   uuu      a uu         c  g   C                     c --a     ug 
ggucua   agg   gcauga g  gaagagagu aa uug AGCCAAGGAUGACUUGCCGGa c   aaagu  u
||||||   |||   |||||| |  ||||||||| || ||| ||||||||||||||||||||| |   |||||  g
ccagau   ucc   uguacu c  cuucucucg uu aau ucgguuuuuguugaacggccu g   uuuua  a
      ugc   uau      - uu         u  g   a                     u auc     cc 


Annotation confidence Not enough data
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Genome context
chr7: 4225343-4225491 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sly-MIR169a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sly-miR169a

Accession MIMAT0007918
Description Solanum lycopersicum sly-miR169a mature miRNA
Sequence 41 - CAGCCAAGGAUGACUUGCCGG - 61
Evidence experimental
454 [1]

References

  1. PubMed ID: 18653800
    Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
    "Genome Res (2008) 18:1602-1609