Stem-loop sequence sly-MIR167a

Accession

MI0008360 (change log)

Previous IDs

sly-MIR167

Description

Solanum lycopersicum miR167 stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

24 open access papers mention sly-MIR167a
(222 sentences)

Stem-loop

        -ca   c ag   u   a       g        aaa        uu    ca 
5' ucgug   gca u  cag uga gcugcca caugaucu   cuuuccuu  aguu  a
   |||||   ||| |  ||| ||| ||||||| ||||||||   ||||||||  ||||  a
3' agcac   cgu a  guc auu cgacggu guacuaga   gaaaggag  uuaa  u
        uac   a cu   c   c       -        cua        -c    ua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr6: 49339356-49339471 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075C6EA_4081
• miRBase Tracker:MI0008360

Mature sequence sly-miR167a

• Accession: MIMAT0007917
• Previous IDs: sly-miR167
• Sequence: 19 - ugaagcugccagcaugaucua - 39
• Evidence: experimental; 454 [1]

References

1. PMID:18653800 "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening" Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T Genome Res. 18:1602-1609(2008).
2. PMID:18602455 "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill" Zhang J, Zeng R, Chen J, Liu X, Liao Q Gene. 423:1-7(2008).