Stem-loop sly-MIR166b

Accession

MI0008359

Description

Solanum lycopersicum sly-MIR166b precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

25 open access papers mention sly-MIR166b
(91 sentences)

Sequence

ucccauagaucauauggaggaaguucucucaguugaggggaauguugucuggcucgaggucaccaauuagauccauaaucccuauauauaccaugcuuuucaaaaaaaagauuuauaauaugaaaagggguuaugaaucauguguuaguguugUCGGACCAGGCUUCAUUCCCCccaauuguuacuccucuagcuagggga
((((.(((......(((((((.((.....((((((.((((((((..((((((.((((.(.(((.(((..(((.((((((((((.(((((......(((((.....))))).......)))))...)))))))))).)))....))).))).).)))).))))))..)))))))).))))))..))))))))).))).))))

Structure

    a   aucaua       a  ucucu      a        uu      c    g u   c   --ua   c          --a     -accaug     c 
uccc uag      uggagga gu     caguug ggggaaug  gucugg ucga g cac aau    gau cauaaucccu   uauau       cuuuu a
|||| |||      ||||||| ||     |||||| ||||||||  |||||| |||| | ||| |||    ||| ||||||||||   |||||       ||||| a
aggg auc      aucuccu ca     guuaac CCCCUUAC  CGGACC GGCU u gug uug    cua guauugggga   guaua       gaaaa a
    g   -----g       -  ---uu      c        UU      A    g u   a   ugua   a          aaa     auauuua     a 

Annotation confidence Not enough data

Genome context

chr8: 65694593-65694793 [+]

Mature sly-miR166b

• Accession: MIMAT0007916
• Description: Solanum lycopersicum sly-miR166b mature miRNA
• Sequence: 154 - UCGGACCAGGCUUCAUUCCCC - 174
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609