miRBase entry: sly-MIR166a

Stem-loop sly-MIR166a


Accession
MI0008358
Description
Solanum lycopersicum sly-MIR166a precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
26 open access papers mention sly-MIR166a
(106 sentences)

Sequence

guugaggagaaugucgucugguucgagaucuuucauaagaaagguaaaugaaugacaaguuuucauauauguaucgugaaugauuUCGGACCAGGCUUCAUUCCCCucaac
(((((((.(((((..(((((((((((((((.(((((..((.(.(((.(((((.........))))).))).).))))))).)))))))))))))))..))))).)))))))

Structure
       a     uc               u     aa  a g   a     uga 
guugagg gaaug  gucugguucgagauc uucau  ga a gua augaa   c
||||||| |||||  ||||||||||||||| |||||  || | ||| |||||   a
caacuCC CUUAC  CGGACCAGGCUuuag aagug  cu u uau uacuu   a
       C     UU               u     --  a g   a     uug 


Annotation confidence Not enough data
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Genome context
chr6: 2516284-2516394 [-]

Database links

Mature sly-miR166a

Accession MIMAT0007915
Description Solanum lycopersicum sly-miR166a mature miRNA
Sequence 86 - UCGGACCAGGCUUCAUUCCCC - 106
Evidence experimental
454 [1]

References

  1. PubMed ID: 18653800
    Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
    "Genome Res (2008) 18:1602-1609