miRBase entry: sly-MIR1919a

Stem-loop sly-MIR1919a


Accession
MI0008354
Description
Solanum lycopersicum sly-MIR1919a precursor miRNA
Gene family
MIPF0000582; MIR1919

Literature search
7 open access papers mention sly-MIR1919a
(17 sentences)

Sequence

aucuuccgguaguccugucgcagaugacucucgaucuugucauuaagccccuuucucuaagucuaauuaauuugaauucaaugugguaggACGAGAGUCAUCUGUGACAGGauuauggaagau
((((((((.((((((((((((((((((((((((.(((((((((.........(((..................)))......)))))))))))))))))))))))))))))))))))))))))

Structure
        g                        a         uaagccccu   ucuaaguc 
aucuuccg uaguccugucgcagaugacucucg ucuugucau         uuc        u
|||||||| |||||||||||||||||||||||| |||||||||         |||         
uagaaggu auuaGGACAGUGUCUACUGAGAGC Aggauggug         aag        a
        -                        -         ---uaacuu   uuuaauua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8: 56612335-56612457 [+]

Database links

Mature sly-miR1919a

Accession MIMAT0007911
Description Solanum lycopersicum sly-miR1919a mature miRNA
Sequence 91 - ACGAGAGUCAUCUGUGACAGG - 111
Evidence experimental
454 [1]

References

  1. PubMed ID: 18653800
    Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
    "Genome Res (2008) 18:1602-1609