Stem-loop sequence sly-MIR1916

Accession

MI0008351 (change log)

Description

Solanum lycopersicum miR1916 stem-loop

Literature search

2 open access papers mention sly-MIR1916
(2 sentences)

Stem-loop

         c          -   c                           a   c       aa                   g        a   c          a 
5' gccuaa uuauugguga ccu uuaaauuuggcacgaaauuucacuuag cac ucaagua  gugauguucauuuuagaca cucaugua ggu uuguuguguc u
   |||||| |||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||| |||||||| ||| |||||||||| u
3' cggauu aguaaccacu gga aauuugaacugugcuuuaaagugaauc gug aguucau  cgcuacaaguaaaaucugu gaguacau cca aacaacauag u
         a          a   -                           c   a       -c                   g        c   a          u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr8: 57414133-57414346 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008351

Mature sequence sly-miR1916

• Accession: MIMAT0007908
• Sequence: 38 - auuucacuuagacaccucaa - 57
• Evidence: experimental; 454 [1]

References

1. PMID:18653800 "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening" Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T Genome Res. 18:1602-1609(2008).