Stem-loop sequence bmo-mir-133

Accession

MI0008345 (change log)

Description

Bombyx mori miR-133 stem-loop

Gene family

MIPF0000029; mir-133

Literature search

8 open access papers mention bmo-mir-133
(15 sentences)

Stem-loop

   aaagcg      -u    c   u           cuuc  gu     u  cau 
5'       agagcg  uguu gcu uagcugguuga    gg  caaau gu   u
         ||||||  |||| ||| |||||||||||    ||  ||||| ||   u
3'       uuucgu  acaa uga gucgaccaacu    cc  guuua ua   u
   ------      cu    u   u           -ucc  ug     c  uac 

Deep sequencing

10 reads, 0 reads per million, 1 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004582020.1: 5611904-5612004 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008345

Mature sequence bmo-miR-133

• Accession: MIMAT0007901
• Sequence: 64 - uugguccccuucaaccagcugu - 85
• Deep sequencing: 10 reads, 1 experiments
• Evidence: experimental; Illumina [2]

References

1. PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
2. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).