miRBase entry: bmo-mir-87

Stem-loop bmo-mir-87


Accession
MI0008344
Description
Bombyx mori bmo-mir-87 precursor miRNA
Gene family
MIPF0000152; mir-87

Literature search
2 open access papers mention bmo-mir-87
(2 sentences)

Sequence

205 reads, 34 reads per million, 3 experiments
ugaagaaguucgguacacuaaugggccugaaucguugcucagaccuguauuuucgaccaggUGAGCAAACUUUCAGGUGUGUuagugccggcuggucuaca
...((((((.(((..((((((((.(((((((...((((((..(((((..........)))))))))))...))))))).))))))))))))))..)))...

Structure
uga   --   u   ua        g       ucg      ag     uauu 
   aga  agu cgg  cacuaaug gccugaa   uugcuc  accug    u
   |||  ||| |||  |||||||| |||||||   ||||||  |||||     
   ucu  ucg gcc  gugauUGU UGGACUU   AACGAG  Uggac    u
aca   gg   -   --        G       UCA      --     cagc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
NW_004581697.1: 299073-299173 [+]

Database links

Mature bmo-miR-87

Accession MIMAT0007900
Description Bombyx mori bmo-miR-87 mature miRNA
Sequence 62 - UGAGCAAACUUUCAGGUGUGU - 82
Evidence experimental
RT-PCR [2], Illumina [3]
Database links

References

  1. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  2. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  3. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148