Stem-loop sequence bmo-mir-79

AccessionMI0008343 (change log)
DescriptionBombyx mori miR-79 stem-loop
Gene family MIPF0000014; mir-9
Literature search

7 open access papers mention bmo-mir-79
(11 sentences)

   -cgccgccg      c     c       cg        cc    - auc 
5'          ggcgcg ugcga gcuuugg  auuuagcu  guga c   a
            |||||| ||||| |||||||  ||||||||  |||| |    
3'          ccgcgc gcgcu cgaaacc  uagaucga  uacu g   u
   gcaacucug      u     a       au        aa    u ccu 
Get sequence
Deep sequencing
4404 reads, 667 reads per million, 3 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (ASM15162v1; GCA_000151625.1) Overlapping transcripts
NW_004581774.1: 31444-31543 [+]
Clustered miRNAs
< 10kb from bmo-mir-79
bmo-mir-9cNW_004581774.1: 28981-29088 [+]
bmo-mir-306aNW_004581774.1: 30978-31085 [+]
bmo-mir-306bNW_004581774.1: 30994-31069 [-]
bmo-mir-79NW_004581774.1: 31444-31543 [+]
bmo-mir-9bNW_004581774.1: 31448-31537 [-]
Database links

Mature sequence bmo-miR-79-5p

Accession MIMAT0015275
Previous IDsbmo-miR-79*

23 - 


 - 44

Get sequence
Deep sequencing7 reads, 2 experiments
Evidence experimental; Illumina [3]

Mature sequence bmo-miR-79-3p

Accession MIMAT0007899
Previous IDsbmo-miR-79

55 - 


 - 80

Get sequence
Deep sequencing4394 reads, 3 experiments
Evidence experimental; RT-PCR [2], Illumina [3]
Database links


PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).