miRBase entry: bmo-mir-79

Stem-loop bmo-mir-79


Accession
MI0008343
Description
Bombyx mori bmo-mir-79 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
7 open access papers mention bmo-mir-79
(11 sentences)

Sequence

4234 reads, 743 reads per million, 3 experiments
cgccgccgggcgcgcugcgacgCUUUGGCGAUUUAGCUCCGUGAcaucauuccgUUCAUAAAGCUAGAUUACCAAAGCAUcgcgucgcgccgucucaacg
........((((((.(((((.(((((((.(((((((((..(((((........).))))..))))))))).))))))).))))).)))))).........

Structure
-cgccgccg      c     c       C         CC    - auc 
         ggcgcg ugcga gCUUUGG GAUUUAGCU  GUGA c   a
         |||||| ||||| ||||||| |||||||||  |||| |    
         ccgcgc gcgcU CGAAACC UUAGAUCGA  UACU g   u
gcaacucug      u     A       A         AA    U ccu 


Annotation confidence Not enough data
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Genome context
NW_004581774.1: 31444-31543 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-79
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-79-5p

Accession MIMAT0015275
Description Bombyx mori bmo-miR-79-5p mature miRNA
Sequence 23 - CUUUGGCGAUUUAGCUCCGUGA - 44
Evidence experimental
Illumina [3]

Mature bmo-miR-79-3p

Accession MIMAT0007899
Description Bombyx mori bmo-miR-79-3p mature miRNA
Sequence 55 - UUCAUAAAGCUAGAUUACCAAAGCAU - 80
Evidence experimental
RT-PCR [2], Illumina [3]
Database links

References

  1. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  2. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  3. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148