miRBase entry: bmo-mir-13b

Stem-loop bmo-mir-13b


Accession
MI0008342
Description
Bombyx mori bmo-mir-13b precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
5 open access papers mention bmo-mir-13b
(19 sentences)

Sequence

460 reads, 88 reads per million, 3 experiments
guccauggcccacUCGUAAAAAUGGCUGUGUCGUGuagcaacccucaUAUCACAGCCAUUUUUGACGAGUugggcugugu
...(((((((((((((((((((((((((((..(((.((.....)))))..))))))))))))).))))).))))))))).

Structure
guc         -     -             UC   u  c 
   cauggccca cUCGU AAAAAUGGCUGUG  GUG ag a
   ||||||||| ||||| |||||||||||||  ||| || a
   gugucgggu GAGCA UUUUUACCGACAC  Uac uc c
--u         U     G             UA   -  c 


Annotation confidence High
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Genome context
NW_004582015.1: 7692288-7692367 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-13b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-13b-5p

Accession MIMAT0015274
Description Bombyx mori bmo-miR-13b-5p mature miRNA
Sequence 14 - UCGUAAAAAUGGCUGUGUCGUG - 35
Evidence experimental
Illumina [3]

Mature bmo-miR-13b-3p

Accession MIMAT0007898
Description Bombyx mori bmo-miR-13b-3p mature miRNA
Sequence 48 - UAUCACAGCCAUUUUUGACGAGU - 70
Evidence experimental
Northern [1], cloned [2], Illumina [3]
Database links

References

  1. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  2. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  3. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997