Stem-loop sequence bmo-mir-13b

Accession

MI0008342 (change log)

Description

Bombyx mori miR-13b stem-loop

Gene family

MIPF0000049; mir-2

Literature search

5 open access papers mention bmo-mir-13b
(19 sentences)

Stem-loop

   guc         -     -             uc   u  c 
5'    cauggccca cucgu aaaaauggcugug  gug ag a
      ||||||||| ||||| |||||||||||||  ||| || a
3'    gugucgggu gagca uuuuuaccgacac  uac uc c
   --u         u     g             ua   -  c 

Deep sequencing

524 reads, 33.3 reads per million, 3 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004582015.1: 7692288-7692367 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-13b

• bmo-mir-2a-1: NW_004582015.1: 7692561-7692650 [-]
• bmo-mir-13a: NW_004582015.1: 7692416-7692494 [-]
• bmo-mir-13b: NW_004582015.1: 7692288-7692367 [-]
• bmo-mir-2a-2: NW_004582015.1: 7692153-7692232 [-]
• bmo-mir-2b: NW_004582015.1: 7692030-7692105 [-]

Database links

• miRBase Tracker:MI0008342

Mature sequence bmo-miR-13b-5p

• Accession: MIMAT0015274
• Previous IDs: bmo-miR-13b*
• Sequence: 14 - ucguaaaaauggcugugucgug - 35
• Deep sequencing: 45 reads, 3 experiments
• Evidence: experimental; Illumina [3]

Mature sequence bmo-miR-13b-3p

• Accession: MIMAT0007898
• Previous IDs: bmo-miR-13b
• Sequence: 48 - uaucacagccauuuuugacgagu - 70
• Deep sequencing: 479 reads, 3 experiments
• Evidence: experimental; Northern [1], cloned [2], Illumina [3]
• Database links:
  • RNAcentral:URS00005E89C3_7091

References

1. PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
2. PMID:18714353 "The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages" Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J PLoS One. 3:e2997(2008).
3. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).