miRBase entry: bmo-mir-2a-2

Stem-loop bmo-mir-2a-2


Accession
MI0008339
Description
Bombyx mori bmo-mir-2a-2 precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
11 open access papers mention bmo-mir-2a-2
(85 sentences)

Sequence

1452 reads, 291 reads per million, 3 experiments
aauguuucgucgCUCACAAAGUGGUUGUCGUAUGcguuuuuacuuuggccaUAUCACAGCCAGCUUUGAUGAGCgaugaa
.....(((((((((((((((((((((((.(((((.(((........)))))))).))))))).))))).)))))))))))

Structure
aaugu           -     -       C     c   uuu 
     uucgucgCUCA CAAAG UGGUUGU GUAUG guu   a
     ||||||||||| ||||| ||||||| ||||| |||    
     aaguagCGAGU GUUUC ACCGACA UAUac cgg   c
-----           A     G       C     -   uuu 


Annotation confidence High
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Genome context
NW_004582015.1: 7692153-7692232 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-2a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2a-3p

Accession MIMAT0007894
Description Bombyx mori bmo-miR-2a-3p mature miRNA
Sequence 52 - UAUCACAGCCAGCUUUGAUGAGC - 74
Evidence experimental
Northern [1], RT-PCR [2], Illumina [3]
Database links

Mature bmo-miR-2a-2-5p

Accession MIMAT0015272
Description Bombyx mori bmo-miR-2a-2-5p mature miRNA
Sequence 13 - CUCACAAAGUGGUUGUCGUAUG - 34
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  2. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  3. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148