Stem-loop sequence osa-MIR812j

Accession

MI0008299 (change log)

Description

Oryza sativa miR812j stem-loop

Gene family

MIPF0000345; MIR812

Literature search

10 open access papers mention osa-MIR812j
(17 sentences)

Stem-loop

   aga u   ---   ------        --g         uc       c                          u              ug            --       uuu   aaaaacuaaaaaacacaagucacgcauaaacuacu 
5'    g gca   ucc      uuggucuu   gauaguacu  cuuuguc caaaauaagcguagccaugaguuuuc uguccaacuuuaau  uucgucuuauuu  aauuuuu   uga                                   a
      | |||   |||      ||||||||   |||||||||  ||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||  |||||||   |||                                   u
3'    c cgu   agg      gacuagaa   uuaucauga  gaggcag guuuuauuugcgucgguacucaaagg acagguugaaauua  aggcagaauaaa  uuaaaaa   acu                                   u
   --a -   aaa   uugauc        agg         ga       u                          c              gu            cu       cau   aaucauaaaaauaacaauaaucuaauauuuuguac 

Deep sequencing

4356 reads, 600 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr8: 19806333-19806629 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008299

Mature sequence osa-miR812j

• Accession: MIMAT0007850
• Sequence: 200 - aagacggaugauuaaaguuggaca - 223
• Deep sequencing: 2494 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000034493F_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).