Stem-loop sequence osa-MIR812h

Accession

MI0008297 (change log)

Description

Oryza sativa miR812h stem-loop

Gene family

MIPF0000345; MIR812

Literature search

10 open access papers mention osa-MIR812h
(16 sentences)

Stem-loop

   uu    u        cc    u      c au         -  --c                            cu        -------      u 
5'   guac cccuccgu  cauu uaagug a  caugaguuu cg   ccaacuuuaaucaucuguuuuauuugaa  uuuuauaa       auagua u
     |||| ||||||||  |||| |||||| |  ||||||||| ||   ||||||||||||||||||||||||||||  ||||||||       ||||||  
3'   caug gggaggua  guaa auucac u  guacucaaa gc   gguugaaauuaguaggcagaauaaauuu  aaaauauu       uguuau u
   au    -        aa    c      a cg         a  aca                            --        agaguau      u 

Deep sequencing

2665 reads, 300 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr3: 1164921-1165107 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008297

Mature sequence osa-miR812h

• Accession: MIMAT0007848
• Sequence: 121 - aagacggaugauuaaaguuggaca - 144
• Deep sequencing: 2307 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000034493F_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).