Stem-loop sequence osa-MIR812g

Accession

MI0008296 (change log)

Description

Oryza sativa miR812g stem-loop

Gene family

MIPF0000345; MIR812

Literature search

11 open access papers mention osa-MIR812g
(19 sentences)

Stem-loop

   uucc    uaa     c                    c   -     a  c cu                           aaaaauuaaaaacauaagucaugaguaaaguauacuauuca 
5'     gaug   ucccu uguuccauuuuaagugcagc aug guuuu cg g  caacuuuaaucguccgucuuauuuaaa                                         u
       ||||   ||||| |||||||||||||||||||| ||| ||||| || |  |||||||||||||||||||||||||||                                         a
3'     cuau   aggga gcaggguaaaauucauguug uac caaag gu c  guugaaauuaguaggcagaauaaauuu                                         u
   -uua    --g     a                    a   u     -  a ag                           aaaaaaauauuaaucauaaaaauaacaauacucuauuauuu 

Deep sequencing

3078 reads, 300 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr3: 5230013-5230254 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008296

Mature sequence osa-miR812g

• Accession: MIMAT0007847
• Sequence: 173 - aagacggaugauuaaaguuggaca - 196
• Deep sequencing: 2192 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000034493F_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).