Stem-loop sequence osa-MIR1875

Accession

MI0008278 (change log)

Description

Oryza sativa miR1875 stem-loop

Literature search

1 open access papers mention osa-MIR1875
(1 sentences)

Stem-loop

   gc   c      ca        ug            a   acauu     a aacg    c a         c       c     ug ug     --au   uuaac      cu    --     u 
5'   ugu cauuuu  uugcacuu  cuccauuguggu uug     cugca g    aguc c guaucaagu acuguua ggugu  u  guacc    uga     auaaca  ugac  ggcca a
     ||| ||||||  ||||||||  |||||||||||| |||     ||||| |    |||| | ||||||||| ||||||| |||||  |  |||||    |||     ||||||  ||||  |||||  
3'   aca guaaag  aacgugaa  gagguaacacca agc     gacgu c    ucag g cauaguuua ugacaau ucacg  g  caugg    acu     uauugu  guug  cuggu c
   uu   a      ac        gu            a   gaguu     - -gga    u a         u       u     gu ua     agac   ucgac      au    ua     u 

Deep sequencing

53 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr9: 17567947-17568198 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008278

Mature sequence osa-miR1875

• Accession: MIMAT0007829
• Sequence: 220 - acaauggagugaagugcaacagaa - 243
• Deep sequencing: 49 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS0000473EC8_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).