Stem-loop sequence osa-MIR1868

Accession

MI0008270 (change log)

Description

Oryza sativa miR1868 stem-loop

Literature search

4 open access papers mention osa-MIR1868
(4 sentences)

Stem-loop

   gg    gc       --       ua    ac       a       cuc                c      gg   ugu  u 
5'   aaag  uuuguaa  aacacac  uuug  aguuugg aagcgug   acggaaaacgagggag agccaa  cau   uc u
     ||||  |||||||  |||||||  ||||  ||||||| |||||||   |||||||||||||||| ||||||  |||   || a
3'   uuuc  aaacguu  uugugug  aaau  ucgagcc uucgcac   ugccuuuugcuccuuc ucgguu  gua   gg c
   ua    aa       cu       gc    cu       c       aaa                a      aa   uuu  c 

Deep sequencing

852 reads, 400 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 19715448-19715616 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR1868

• osa-MIR1423: Chr4: 19715117-19715252 [+]
• osa-MIR1868: Chr4: 19715448-19715616 [+]

Database links

• miRBase Tracker:MI0008270

Mature sequence osa-miR1868

• Accession: MIMAT0007820
• Sequence: 47 - ucacggaaaacgagggagcagcca - 70
• Deep sequencing: 789 reads, 2 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Database links:
  • RNAcentral:URS000058D5A9_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).
2. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).