Stem-loop sequence osa-MIR1861i

Accession

MI0008255 (change log)

Description

Oryza sativa miR1861i stem-loop

Gene family

MIPF0000567; MIR1861

Literature search

8 open access papers mention osa-MIR1861i
(47 sentences)

Stem-loop

      c        a           a     u       uc  ucu 
5' ggc cgaucuug ggcaggaacug guagu ggugaac  gc   a
   ||| |||||||| ||||||||||| ||||| |||||||  ||    
3' cug gcuagaac cuguccuuggc caucg ucacuug  ug   u
      a        c           a     u       cu  uug 

Deep sequencing

189 reads, 50 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr6: 14949509-14949600 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008255

Mature sequence osa-miR1861i

• Accession: MIMAT0007804
• Sequence: 5 - cgaucuugaggcaggaacugag - 26
• Deep sequencing: 185 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00001FBCD0_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).