Stem-loop sequence osa-MIR1860

Accession

MI0008245 (change log)

Description

Oryza sativa miR1860 stem-loop

Literature search

4 open access papers mention osa-MIR1860
(4 sentences)

Stem-loop

   ucuu          ua   -----u                         -             -   auuugccuca 
5'     gauuugaugg  ggg      uaguguuauuuguaaagagaaaacc agcuuccagaucu cga          a
       ||||||||||  |||      ||||||||||||||||||||||||| ||||||||||||| |||          a
3'     cuggauuacc  ccc      aucacaauaaacauuucucuuuugg ucgaaggucuaga guu          c
   --gu          --   uuuuuu                         a             u   cucuucuauu 

Deep sequencing

67 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr1: 934420-934567 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0008245

Mature sequence osa-miR1860-5p

• Accession: MIMAT0007793
• Sequence: 38 - agaaaaccagcuuccagaucu - 58
• Deep sequencing: 15 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00000886ED_39947

Mature sequence osa-miR1860-3p

• Accession: MIMAT0007794
• Sequence: 91 - aucuggaagcuagguuuucucu - 112
• Deep sequencing: 49 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000008AA1A_39947

References

1. PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C Genome Res. 18:1456-1465(2008).