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miRBase |
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Stem-loop sequence ssc-mir-221 |
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Accession | MI0008221 (change log) | |||||
Description | Sus scrofa miR-221 stem-loop | |||||
Gene family | MIPF0000051; mir-221 | |||||
Literature search |
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23 open access papers mention ssc-mir-221 | |||||
Stem-loop |
----u ug u auuu - u 5' gaacc gca acaauguag cugu guu g ||||| ||| ||||||||| |||| ||| u 3' uuugg cgu uguuacauc gaca cgg u cggac gu c ---- a g |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence ssc-miR-221-5p |
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Accession | MIMAT0022949 |
Sequence |
4 - accuggcauacaauguagauuucugu - 29 |
Deep sequencing | 953 reads, 15 experiments |
Evidence | experimental; Illumina [3] |
Mature sequence ssc-miR-221-3p |
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Accession | MIMAT0007762 |
Previous IDs | ssc-miR-221 |
Sequence |
44 - agcuacauugucugcuggguuu - 65 |
Deep sequencing | 15254 reads, 15 experiments |
Evidence | experimental; cloned [1], Illumina [2-4] |
References |
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1 |
PMID:18548309
"Identification and characterization of new microRNAs from pig"
Mamm Genome. 19:570-580(2008).
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2 |
PMID:19917043
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
Anim Genet. 41:159-168(2010).
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3 |
PMID:21312241
"MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing"
J Cell Biochem. 112:1318-1328(2011).
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4 |
PMID:24499489
"Exploration of microRNAs in porcine milk exosomes"
BMC Genomics. 15:100(2014).
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