miRBase entry: gga-mir-216b

Stem-loop gga-mir-216b


Accession
MI0008205
Description
Gallus gallus gga-mir-216b precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

477 reads, 8 reads per million, 5 experiments
gagucacagacugggAAAUCUCUGCAGGCAAAUGUGAugucuuuauagcaaucucacaauuaccuguagagauucuacaaucuggcauc
......((((.((((((.((((((((((.((.(((((((.((....))))...))))).)).)))))))))))))).)).)))).....

Structure
gaguca    c  -    A          C  A     ---  u  u 
      caga ug ggAA UCUCUGCAGG AA UGUGA   ug cu u
      |||| || |||| |||||||||| || |||||   || ||  
      gucu ac ucuu agagaugucc uu acacu   ac ga a
-cuacg    a  a    -          a  a     cua  -  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3: 323483-323571 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from gga-mir-216b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-216b

Accession MIMAT0007748
Description Gallus gallus gga-miR-216b mature miRNA
Sequence 16 - AAAUCUCUGCAGGCAAAUGUGA - 37
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18511220
    Identification of novel chicken microRNAs and analysis of their genomic organization
    "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
    "Gene (2008) 418:34-40