miRBase entry: cfa-mir-500

Stem-loop cfa-mir-500


Accession
MI0008185
Description
Canis familiaris cfa-mir-500 precursor miRNA
Gene family
MIPF0000139; mir-500


Sequence

aauccuugcuaccugggugagagugcuuucugaaugcaAUGCACCUGGGCAAGGAUUCU
(((((((((...(((((((....(((.........)))...))))))))))))))))..

Structure
--         uac       agag   uuu 
  aauccuugc   cugggug    ugc   c
  |||||||||   |||||||    |||   u
  UUAGGAACG   GGUCCAC    acg   g
UC         ---       -GUA   uaa 


Annotation confidence Not enough data
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Genome context
chrX: 42779872-42779930 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from cfa-mir-500
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-500

Accession MIMAT0006759
Description Canis familiaris cfa-miR-500 mature miRNA
Sequence 39 - AUGCACCUGGGCAAGGAUUCU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415