miRBase entry: cfa-mir-421

Stem-loop cfa-mir-421


Accession
MI0008181
Description
Canis familiaris cfa-mir-421 precursor miRNA
Gene family
MIPF0000098; mir-95


Sequence

cucauuaaauguuuguugaaugaaaaaaugaaucAUCAACAGACAUUAAUUGGGCG
((((...((((((((((((.(((.........)))))))))))))))...))))..

Structure
--    uua            a   aaa 
  cuca   aauguuuguuga uga   a
  ||||   |||||||||||| |||   a
  GGGU   UUACAGACAACU Acu   u
GC    UAA            -   aag 


Annotation confidence Not enough data
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Genome context
chrX: 57550055-57550110 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-421
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-421

Accession MIMAT0006755
Description Canis familiaris cfa-miR-421 mature miRNA
Sequence 35 - AUCAACAGACAUUAAUUGGGCG - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415