miRBase entry: cfa-mir-212

Stem-loop cfa-mir-212


Accession
MI0008155
Description
Canis familiaris cfa-mir-212 precursor miRNA
Gene family
MIPF0000065; mir-132


Sequence

ACCUUGGCUCUAGACUGCUUACUgcccgggccgcccucaguaacagucuccagucacggcca
.((.(((((..((((((.((((((...(((...))).))))))))))))..))))).))...

Structure
--A  U     CU      C      ccc   c 
   CC UGGCU  AGACUG UUACUg   ggg  
   || |||||  |||||| ||||||   ||| c
   gg acuga  ucugac aaugac   ccc  
acc  c     cc      -      --u   g 


Annotation confidence Not enough data
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Genome context
chr9: 46153913-46153974 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-212
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-212

Accession MIMAT0006731
Description Canis familiaris cfa-miR-212 mature miRNA
Sequence 1 - ACCUUGGCUCUAGACUGCUUACU - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415