Stem-loop cfa-mir-409

Accession

MI0008147

Description

Canis familiaris cfa-mir-409 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

agguuacccgagcaacuuugcaucuggacgacgAAUGUUGCUCGUUGAACCCCU
.((((...(((((((((((((........).)))).))))))))...))))...

Structure

--a    acc        -    - auc 
   gguu   cgagcaac uuug c   u
   ||||   |||||||| |||| |    
   CCAA   GCUCGUUG AAgc g   g
UCC    GUU        U    a cag 

Annotation confidence Not enough data

Genome context

chr8: 69293782-69293835 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-409

Mature cfa-miR-409

• Accession: MIMAT0006726
• Description: Canis familiaris cfa-miR-409 mature miRNA
• Sequence: 34 - AAUGUUGCUCGUUGAACCCCU - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415