miRBase entry: cfa-mir-382

Stem-loop cfa-mir-382


Accession
MI0008145
Description
Canis familiaris cfa-mir-382 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

aaguuguucgugguggauucgcuuuacuuaugacgAAUCAUUCACGGACAACACUUU
..(((((((((((..(((((((.........).))))))..))))))))))).....

Structure
---aa           ug      - uuu 
     guuguucgugg  gauucg c   a
     |||||||||||  |||||| |   c
     CAACAGGCACU  CUAAgc g   u
UUUCA           UA      a uau 


Annotation confidence Not enough data
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Genome context
chr8: 69283123-69283179 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from cfa-mir-382
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-382

Accession MIMAT0006724
Description Canis familiaris cfa-miR-382 mature miRNA
Sequence 36 - AAUCAUUCACGGACAACACUUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415