miRBase entry: cfa-mir-411

Stem-loop cfa-mir-411

Accession

MI0008135

Description

Canis familiaris cfa-mir-411 precursor miRNA

Gene family

MIPF0000126; mir-379

Sequence

AUAGUAGACCGUAUAGCGUACGcuuuaucugugacguauguaacacgguccacuaacc
.((((.((((((...((((((((.........).)))))))...)))))).))))...

Structure

--A    A      AUA       - uuu 
   UAGU GACCGU   GCGUACG c   a
   |||| ||||||   ||||||| |   u
   auca cuggca   uguaugc g   c
cca    c      caa       a ugu

Annotation confidence Not enough data

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Genome context

chr8: 69255094-69255151 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from cfa-mir-411

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-411

Accession	MIMAT0006716
Description	Canis familiaris cfa-miR-411 mature miRNA
Sequence	1 - AUAGUAGACCGUAUAGCGUACG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415