miRBase entry: cfa-mir-181b-1

Stem-loop cfa-mir-181b-1

Accession

MI0008127

Description

Canis familiaris cfa-mir-181b-1 precursor miRNA

Gene family

MIPF0000007; mir-181

Sequence

AACAUUCAUUGCUGUCGGUGgguugaacuguguggacaagcucacugaacaaugaaugcaac
..(((((((((...((((((((((....(((....))))))))))))).)))))))))....

Structure

--AA         CUG          gaac   g 
    CAUUCAUUG   UCGGUGgguu    ugu u
    |||||||||   ||||||||||    |||  
    guaaguaac   agucacucga    aca g
caac         --a          ----   g

Annotation confidence Not enough data

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Genome context

chr7: 4055651-4055712 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-181b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-181b

Accession	MIMAT0006708
Description	Canis familiaris cfa-miR-181b mature miRNA
Sequence	1 - AACAUUCAUUGCUGUCGGUG - 20
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415