miRBase entry: cfa-mir-199-2

Stem-loop cfa-mir-199-2

Accession

MI0008124

Description

Canis familiaris cfa-mir-199-2 precursor miRNA

Gene family

MIPF0000040; mir-199

Sequence

ccaguguucagacuaccuguucaggacaaugccguuguACAGUAGUCUGCACAUUGGUU
(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))..

Structure

--       u        c   u  --  ac 
  ccagugu cagacuac ugu ca  gg  a
  ||||||| |||||||| ||| ||  ||   
  GGUUACA GUCUGAUG ACA gu  cc  a
UU       C        -   u  ug  gu

Annotation confidence Not enough data

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Genome context

chr7: 26812766-26812824 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-199-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-199

Accession	MIMAT0006642
Description	Canis familiaris cfa-miR-199 mature miRNA
Sequence	39 - ACAGUAGUCUGCACAUUGGUU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415