miRBase entry: cfa-mir-1842

Stem-loop cfa-mir-1842


Accession
MI0008116
Description
Canis familiaris cfa-mir-1842 precursor miRNA
Gene family
MIPF0000788; mir-1842


Sequence

UGGCUCUGCGAGGUCAGCUCAaggugggucuggauauugagcaggccugucagggcguug
..((((((..(((((.((((((.((........)).)))))).)))))..))))))....

Structure
--UG      CG     A      g  ggg 
    GCUCUG  AGGUC GCUCAa gu   u
    ||||||  ||||| |||||| ||    
    cgggac  uccgg cgaguu ua   c
guug      ug     a      a  ggu 


Annotation confidence Not enough data
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Genome context
chr6: 38759035-38759094 [+]

Database links

Mature cfa-miR-1842

Accession MIMAT0006701
Description Canis familiaris cfa-miR-1842 mature miRNA
Sequence 1 - UGGCUCUGCGAGGUCAGCUCA - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415