miRBase entry: cfa-mir-106b

Stem-loop cfa-mir-106b


Accession
MI0008109
Description
Canis familiaris cfa-mir-106b precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

UAAAGUGCUGACAGUGCAGAUagcgguccuccgugcuaccgcacuguggguacuugcug
..(((((((.(((((((.(.(((((........)))))).))))))).)))))))....

Structure
--UA       G       A A     guc 
    AAGUGCU ACAGUGC G Uagcg   c
    ||||||| ||||||| | |||||    
    uucaugg ugucacg c aucgu   u
gucg       g       c -     gcc 


Annotation confidence Not enough data
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Genome context
chr6: 9498558-9498616 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cfa-mir-106b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-106b

Accession MIMAT0006695
Description Canis familiaris cfa-miR-106b mature miRNA
Sequence 1 - UAAAGUGCUGACAGUGCAGAU - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415