miRBase entry: cfa-mir-195

Stem-loop cfa-mir-195


Accession
MI0008105
Description
Canis familiaris cfa-mir-195 precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

UAGCAGCACAGAAAUAUUGGCAcugggaagagagucugccaauauuggcugugcugcucua
.((((((((((.((((((((((((........)))..)))))))))..))))))))))...

Structure
--U          -A         --   ggg 
   AGCAGCACAG  AAUAUUGGC  Acu   a
   ||||||||||  |||||||||  |||    
   ucgucguguc  uuauaaccg  uga   a
auc          gg         uc   gag 


Annotation confidence Not enough data
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Genome context
chr5: 32045450-32045510 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-195
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-195

Accession MIMAT0006692
Description Canis familiaris cfa-miR-195 mature miRNA
Sequence 1 - UAGCAGCACAGAAAUAUUGGCA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415