miRBase entry: cfa-mir-143

Stem-loop cfa-mir-143


Accession
MI0008092
Description
Canis familiaris cfa-mir-143 precursor miRNA
Gene family
MIPF0000094; mir-143


Sequence

ggugcagugcugcaucucuggucaguugggagucUGAGAUGAAGCACUGUAGCUC
(.(((((((((.((((((.((((......)).)).)))))).))))))))).)..

Structure
-- g         g      u  -  ag 
  g ugcagugcu caucuc gg uc  u
  | ||||||||| |||||| || ||   
  C AUGUCACGA GUAGAG cu ag  u
CU G         A      U  g  gg 


Annotation confidence Not enough data
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Genome context
chr4: 59534535-59534589 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-143

Accession MIMAT0006682
Description Canis familiaris cfa-miR-143 mature miRNA
Sequence 35 - UGAGAUGAAGCACUGUAGCUC - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415