miRBase entry: cfa-mir-194

Stem-loop cfa-mir-194


Accession
MI0008091
Description
Canis familiaris cfa-mir-194 precursor miRNA
Gene family
MIPF0000055; mir-194


Sequence

UGUAACAGCAACUCCAUGUGGAuugugugccaauuuccaguggagaugcuguuacuuu
.(((((((((.((((((.((((...((...))...)))))))))).)))))))))...

Structure
--U         A      G    uug  u 
   GUAACAGCA CUCCAU UGGA   ug  
   ||||||||| |||||| ||||   || g
   cauugucgu gaggug accu   ac  
uuu         a      -    uua  c 


Annotation confidence Not enough data
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Genome context
chr38: 14895401-14895458 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-194
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-194

Accession MIMAT0006681
Description Canis familiaris cfa-miR-194 mature miRNA
Sequence 1 - UGUAACAGCAACUCCAUGUGGA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415