miRBase entry: cfa-mir-16-2

Stem-loop cfa-mir-16-2

Accession

MI0008084

Description

Canis familiaris cfa-mir-16-2 precursor miRNA

Gene family

MIPF0000006; mir-15

Sequence

UAGCAGCACGUAAAUAUUGGCGuagugaaauaaaaauuaaacaccaauauuauugugcugcuuua
.(((((((((..((((((((.((.................)).))))))))..)))))))))...

Structure

--U         UA        C  agugaaa 
   AGCAGCACG  AAUAUUGG Gu       u
   |||||||||  |||||||| ||       a
   ucgucgugu  uuauaacc ca       a
auu         ua        a  aauuaaa

Annotation confidence Not enough data

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Genome context

chr34: 26460807-26460871 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-16-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-16

Accession	MIMAT0006648
Description	Canis familiaris cfa-miR-16 mature miRNA
Sequence	1 - UAGCAGCACGUAAAUAUUGGCG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415