miRBase entry: cfa-let-7c

Stem-loop cfa-let-7c


Accession
MI0008076
Description
Canis familiaris cfa-let-7c precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

UGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaacuguacaaccuucuagcuuucc
.(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))...

Structure
--U   G   U             ua  g ua  c 
   GAG UAG AGGUUGUAUGGUU  ga u  ca  
   ||| ||| |||||||||||||  || |  || c
   uuc auc uccaacaugucaa  uu a  gu  
ccu   g   u             --  g gg  c 


Annotation confidence Not enough data
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Genome context
chr31: 13259522-13259588 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-let-7c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-let-7c

Accession MIMAT0006669
Description Canis familiaris cfa-let-7c mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUGGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415