miRBase entry: cfa-mir-19b-1

Stem-loop cfa-mir-19b-1


Accession
MI0008054
Description
Canis familiaris cfa-mir-19b-1 precursor miRNA
Gene family
MIPF0000011; mir-19


Sequence

guuuugcagguuugcauccagcugugugauauucugcUGUGCAAAUCCAUGCAAAACUG
((((((((((((((((..((((.............)))))))))).)).))))))))..

Structure
--        -  -      uc    ugugu 
  guuuugca gg uuugca  cagc     g
  |||||||| || ||||||  ||||     a
  CAAAACGU CC AAACGU  GUcg     u
GU        A  U      --    ucuua 


Annotation confidence Not enough data
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Genome context
chr22: 42478598-42478656 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from cfa-mir-19b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-19b

Accession MIMAT0006652
Description Canis familiaris cfa-miR-19b mature miRNA
Sequence 38 - UGUGCAAAUCCAUGCAAAACUG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415