miRBase entry: cfa-mir-27a

Stem-loop cfa-mir-27a

Accession

MI0008040

Description

Canis familiaris cfa-mir-27a precursor miRNA

Gene family

MIPF0000036; mir-27

Sequence

gggcuuagcugcuugugagcagaguccacaccaagucgugUUCACAGUGGCUAAGUUCCG
(((((((((((((.(((((((((.(........).)).))))))))))))))))))))..

Structure

--             u       -  g cca 
  gggcuuagcugcu gugagca ga u   c
  ||||||||||||| ||||||| || |    
  CUUGAAUCGGUGA CACUUgu cu a   a
GC             -       g  g acc

Annotation confidence Not enough data

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Genome context

chr20: 48620556-48620615 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-27a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-27a

Accession	MIMAT0006641
Description	Canis familiaris cfa-miR-27a mature miRNA
Sequence	41 - UUCACAGUGGCUAAGUUCCG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415