miRBase entry: cfa-mir-29a

Stem-loop cfa-mir-29a

Accession

MI0008022

Description

Canis familiaris cfa-mir-29a precursor miRNA

Gene family

MIPF0000009; mir-29

Sequence

acugauuucuuuugguguucagagucaauauaauuuucUAGCACCAUCUGAAAUCGGUUA
(((((((((...(((((((.((((...........)))))))))))...)))))))))..

Structure

--         uuu       c    ucaa 
  acugauuuc   ugguguu agag    u
  |||||||||   ||||||| ||||    a
  UGGCUAAAG   ACCACGA Ucuu    u
AU         UCU       -    uuaa

Annotation confidence Not enough data

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Genome context

chr14: 6184844-6184903 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-29a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-29a

Accession	MIMAT0006626
Description	Canis familiaris cfa-miR-29a mature miRNA
Sequence	39 - UAGCACCAUCUGAAAUCGGUUA - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415